rs33678836 SNP Detail

Summary

• ID
  rs33678836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105805568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTCTGAGCT CCTGGCTGCC CAGGAACAAC CTACGCCACC
  AAGCTAATGA ACAGAGCAGG AGAGGTATTA GAAGAGCAAC ATCCTTCCTA GAACCTCCTC
  R
  GGGAAATAGG TCTCTTAAAC CTTCAGTATA AGCAATAACA ATGTAGTATC TTTAACCGTG
  ATGAAATGCT GAGACAGACT CTGTATAACA ATAGCTTTAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46843064	NES10703140	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33678836					SNP	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843064	NES10703140	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105805568 () rs orientation: forward

Symbol	Name	Function Class
Rr397920	regulatory region 397920	1597 bp upstream
Rr582806	regulatory region 582806	632 bp proximal
Rr582807	regulatory region 582807	1285 bp proximal
Rr582808	regulatory region 582808	1717 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron