rs33678736 SNP Detail

Summary

• ID
  rs33678736
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:72961582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCCCAACCA TACAATTGTT TTGTTGCTAC TTCCTAACAG GAATTTTGCT ACTGCCGTGA
  ATCATAATGT AAACAACTGA GGTGCAGGAT ATCTGATGTG TGGCCCCTGT GGGAGTTAGG
  ACCCAGAGGT TGAGAACCAT AGGTGATGGT GGGTCATGGG AGTCATGCCT TGGGTTCCAG
  TCTAGCCCTG CTTTGGATAC TGCTCTCTTG CTTTCCTGGT CTGGCTGCTG TAAAGAGCTC
  TGTCTACTAC ACACTCCCTC TACCAGAGAG CAGCTTTCCC TGACACAACA GACTAAAACT
  M
  TAAGCCGAAT TCATCTTTCT TCTCCTAAGC TTCTCTGTCA GGTGTTCTGG CACAACACAA
  AAGCAACTCA TATGCATGCA CGCCCTGTGC AGGTCACCTT TATCCATCTT TGCTTCTTGG
  GCTAGCCAAA GCCGCATCCG CTTGTCACAG TTTTACAGCT TGTCTCCCAG AGCACGAGCT
  TTTAGCTTTA ACTGCCATCT TTCCATCTTC CTTTTCCTAT GGAAGTGCCC ACGCACTGGG
  AAGGATTACT GCTTATCTAA TTTTTAGGGT CTCTGCCAGA AAAAAACTAA AATAAGCAGA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45808458	mCV22994934	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33678736					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:72961582 () rs orientation: forward

Symbol	Name	Function Class
Rr399125	regulatory region 399125	1059 bp downstream
Rr612953	regulatory region 612953	890 bp distal
Tec	tec protein tyrosine kinase	Intron
Tssr46619	transcription start site region 46619	1139 bp downstream