rs33678113 SNP Detail

Summary

• ID
  rs33678113
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105804274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACAGAGA TCAAGCTGCC
  TCAGCCTCCC AACTTCTGGG ATTCCAAGCA TGCATCTGGC TGGGTATTTT ATTTTTAGAA
  TTACACAAAT CCCTATGGGT GAATGGGAAG CAACACCAAA GTTCCTTCTA TGTGCTCGTT
  ATTTGTGACT TGCAGTCTTC CCAAAAGCAT GTGCTCATAA TAAAAGAACA GAGCATGACA
  M
  CTAAGATACC AGGAGCCAGG GCTGGAGATT TGACTCAGTG GTTAAGAGCA TTTGCCACGG
  ACTGGAGAGA TGGCTCAGCG GCTAAGAGCA CTGACTCCTC TACCAGAGGT CCTCAGTTCT
  ATTCCCAGCA ACCACATGGT GGCTCACAAC CATCTATAAT GGGATCCAGT GCCCTCTTCT
  GGTGTGTCTG AAGACAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46843061	NES10703211	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33678113					SNP	A	A	A	C	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843061	NES10703211	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105804274 () rs orientation: forward

Symbol	Name	Function Class
Rr375530	regulatory region 375530	1366 bp downstream
Rr582805	regulatory region 582805	1420 bp distal
Rr582806	regulatory region 582806	1926 bp proximal
Tmigd3	transmembrane and immunoglobulin domain containing 3	Intron