rs33677831 SNP Detail

Summary

• ID
  rs33677831
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127966877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGATGGCC CAACATTGAT
  TGGGACGGCA GGTCGCAACA CTTGTTCTGC AAGAAAAGGC TACGTCCTAC TTACTGCCAG
  CCTGGATGCA GGTTGGGTAG CCCATTAATA GAGTTTCCTT AATCTCGTGT GGGGAGTGGG
  ACGTTCCATT TCCAGAGCAG CTTTTTTGGG CCGCCGCTAT GAGAGAAGGG GCTGGGGGTG
  R
  GGATGCACAT GGCGCCATTG ACTTCCAGAC TTCTGTTGGA ATCACAAAGG CCTCAGGAAG
  ATCAAGGGAT TTTTTTTTCG ACCCCCTTAT GGTTTTCCCA GCTCGGCCTG AACTCCGCTG
  CTCCATGGTC GCCAGCATCG GCGGACCGAT GGATAGACAG TTCCTGGCGT ACACTGTGAG
  CCCCAAACAT TTCGAGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45307927	mCV22674877	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss147552343	ENSMUSSNP3757617	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G		G
ss320501536	CHEV_2_127950693	CHEVERUD	SCREENING_POP	f	SNP						G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33677831					SNP	G	G	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127966877 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	1081 bp upstream
Cpgi12233	CpG island 12233	1740 bp distal
Cpgi12234	CpG island 12234	1001 bp distal
Cpgi12235	CpG island 12235	71 bp proximal
Gm74510	predicted gene, 74510	1260 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr564648	regulatory region 564648	410 bp distal
Rr564650	regulatory region 564650	1654 bp distal
Rr564651	regulatory region 564651	591 bp proximal
Rr564652	regulatory region 564652	1196 bp proximal
Rr564653	regulatory region 564653	1271 bp proximal
Tssr20042	transcription start site region 20042	1073 bp upstream