rs33672336 SNP Detail

Summary

• ID
  rs33672336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127302550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAC ATGGGACTCC CACTGAGATT
  Y
  ATCCACACTC CTTCAAATGA AGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45306849	mCV24472908	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	C
ss147530648	ENSMUSSNP5914730	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss320500122	CHEV_2_127286366	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33672336					SNP	T	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127302550 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnip3	Kv channel interacting protein 3, calsenilin			Intron
				Noncoding-Transcript-Variant
Rr564528	regulatory region 564528			1724 bp proximal
Rr564529	regulatory region 564529			1836 bp proximal