rs33668877 SNP Detail

Summary

• ID
  rs33668877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAATGTTA TATATACATA
  ATGATATGTA TATTTTCAGG GATGACCATT TGGCCTTGAA CAACTAATTG GTGTGCTCTT
  CCCTGGGGAC GAGCACCTCC TCCATTCCTG GCATTCCTCT GTTTTTTAGA GTTCCTTGTG
  TATGGCTGAG CCTTGTGGAC CTTTCTTCAT CCAGTTTGGC ATCCAGTCCA CTGATGTCAT
  Y
  CTCACTCAGC TCGTGCAGTC GTGCATGGGA CTTAATAGTA GCTTCTGATA TTGCTAGGAG
  ACACAATTTC CAAACAAACT CCCTGATCTT CTTGCATTTA TGATCTTTCT GCCCCCTCCT
  CTATAATGTT CCTGAGTTTT AGGTACAGAA ATATTCTGTA AATTTATCTA TTGGAACTAC
  ATTCTGGTTA GCTGTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45306517	mCV23732816	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss320439075	CHEV_2_102429029	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33668877					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419217 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	442 bp downstream
Rr561706	regulatory region 561706	1087 bp proximal
Rr561707	regulatory region 561707	1319 bp proximal