rs33664296 SNP Detail

Summary

• ID
  rs33664296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105610731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGTTTA CCGAGAGCTC
  CTTACAACCG GCTGCTGTTC TGCAGGGTGA AGATATAACT GTGTAAAAGG GGTGGGGCTT
  CAGGGTGGGG AACCCACCTC TGTTTCCTAG GAGGGTCATG GTGGAGGATG CTGCTCTGAC
  CCACTACTTT CTTGAACTGA TTCAACAGCA CCAACACCGT CCAGCCTAAC TTTCTGACTG
  R
  CACATCACTC TGAAGAGGAG TGAGAAGATA GGCCAGGAGC ATAGTCACAG TCACCAAGTT
  CTTCACCTAC CCCCTAAATG TTTTTGAAGA AGTGATCTTG GCTGGCATCA AATGAATGTC
  CACAGTGTCT GCTTTCTCCC TTCGCGGCTT CTCTTGCATC CTTTTGGTTC TGTCTCACAC
  AGACCACCAA AATCTTGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46840805	NES10712940	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33664296					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46840805	NES10712940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105610731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	1106 bp proximal
Inka2	inka box actin regulator 2	1184 bp upstream
Rr367522	regulatory region 367522	1007 bp upstream
Rr582755	regulatory region 582755	1416 bp distal
Rr582756	regulatory region 582756	694 bp proximal
Rr582757	regulatory region 582757	1553 bp proximal
Tssr31079	transcription start site region 31079	1242 bp upstream
Tssr31080	transcription start site region 31080	1273 bp upstream