rs33663443 SNP Detail

Summary

• ID
  rs33663443
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105610688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCATGCC CAGGTTTCAG
  GGATGGAGAA AACCACAGAT CTGCAAATGT TTACCGAGAG CTCCTTACAA CCGGCTGCTG
  TTCTGCAGGG TGAAGATATA ACTGTGTAAA AGGGGTGGGG CTTCAGGGTG GGGAACCCAC
  CTCTGTTTCC TAGGAGGGTC ATGGTGGAGG ATGCTGCTCT GACCCACTAC TTTCTTGAAC
  W
  GATTCAACAG CACCAACACC GTCCAGCCTA ACTTTCTGAC TGGCACATCA CTCTGAAGAG
  GAGTGAGAAG ATAGGCCAGG AGCATAGTCA CAGTCACCAA GTTCTTCACC TACCCCCTAA
  ATGTTTTTGA AGAAGTGATC TTGGCTGGCA TCAAATGAAT GTCCACAGTG TCTGCTTTCT
  CCCTTCGCGG CTTCTCTTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46840802	NES10712939	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33663443					SNP	T	T	T	T	T	T	T	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46840802	NES10712939	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105610688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	1149 bp proximal
Inka2	inka box actin regulator 2	1227 bp upstream
Rr367522	regulatory region 367522	1050 bp upstream
Rr582755	regulatory region 582755	1373 bp distal
Rr582756	regulatory region 582756	737 bp proximal
Rr582757	regulatory region 582757	1596 bp proximal
Tssr31079	transcription start site region 31079	1285 bp upstream
Tssr31080	transcription start site region 31080	1316 bp upstream