rs33663440 SNP Detail

Summary

• ID
  rs33663440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105610513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC ATGCCCAGGT TTCAGGGATG
  R
  AGAAAACCAC AGATCTGCAA ATGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46840799	NES10712938	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	G	G	G	A	G		G	A	G	G		A
ss135577606	ENSMUSSNP2489435	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320863076	CHEV_3_105506115	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33663440					SNP	G	G	G	A	A	G	G	G	A	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46840799	NES10712938	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105610513 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13661	CpG island 13661	1324 bp proximal
Inka2	inka box actin regulator 2	1402 bp upstream
Rr367522	regulatory region 367522	1225 bp upstream
Rr582755	regulatory region 582755	1198 bp distal
Rr582756	regulatory region 582756	912 bp proximal
Rr582757	regulatory region 582757	1771 bp proximal
Tssr31079	transcription start site region 31079	1460 bp upstream
Tssr31080	transcription start site region 31080	1491 bp upstream