rs33662060 SNP Detail

Summary

• ID
  rs33662060
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGTGGAGG CACTGGTTTG TCCCGCGTGG CTGCAGGAGG
  CGAACGCTGG GAGTCGGGTC GAGGTCGCTG CGTGCCAAGG CACTTTTGGG GAAGGGTTGT
  S
  GGCACTGAAG CTGCGGGCAC TTAGCCGAAG ACTGGGTTGG GACGCAATGC CGCACGAGGG
  GCCGCTGAGG CATCTCTCGC GGGCAAGGAG GGCGCGTGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45306222	mCV22674661	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	G
ss147552372	ENSMUSSNP5330866	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33662060					SNP	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968363 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			Intron
				Noncoding-Transcript-Variant
Cpgi12235	CpG island 12235			within coordinates
Gm74510	predicted gene, 74510			within coordinates
Gm75592	predicted gene, 75592			280 bp upstream
Gm75596	predicted gene, 75596			1442 bp downstream
Rr397296	regulatory region 397296			890 bp upstream
Rr564648	regulatory region 564648			1896 bp distal
Rr564651	regulatory region 564651			383 bp distal
Rr564652	regulatory region 564652			216 bp distal
Rr564653	regulatory region 564653			within coordinates
Rr564654	regulatory region 564654			1570 bp proximal
Rr564655	regulatory region 564655			1579 bp proximal
Tssr20042	transcription start site region 20042			387 bp downstream
Tssr20043	transcription start site region 20043			1115 bp upstream
Tssr20044	transcription start site region 20044			1144 bp upstream
Tssr20045	transcription start site region 20045			1668 bp upstream
Tssr20046	transcription start site region 20046			1682 bp upstream
Tssr26150	transcription start site region 26150			957 bp downstream
Tssr26151	transcription start site region 26151			1581 bp downstream