rs33654198 SNP Detail

Summary

• ID
  rs33654198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102282477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAAAGCG GCAACCGATC
  CTTCCAGGAG CGAGAGGTGG CCCCACGTTC TGTCCCGGAC TTCGGGGCGG GGAGGAGGCT
  GAACTGAGGG CGTCCGTGCG GGGGCGTCGG AGCGGGGGCG GGGGCAGAGA CCAATTGTAG
  GGCTTGGGAG TAGCGGCGTG TCCGGTGCTC TTGTTGGGAG TGGGATGATC CCCTTGTACC
  Y
  TCCTTTGGAC TGTGTCTGAT CTGAAAACTT CAGACAGCCC CCCACCGCAG TACAGGCAGG
  GGTCAGGGTG AGTCCTTTTG CTACCTCACT TGGTGTGATT CACGCTGGCT TATGTAAATT
  CCCCGGAAAG TCTCGAGCCC TAGAGGATGT GACTCCAGCT GGGAGAGGAA CCATCTGTAG
  CCAATGACTT TGAACCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45304709	mCV23728300	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss147112284	ENSMUSSNP3177381	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320437741	CHEV_2_102292289	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33654198					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102282477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11976	CpG island 11976	within coordinates
Fjx1	four jointed box 1	mRNA-UTR
Rr561694	regulatory region 561694	1372 bp distal
Rr561695	regulatory region 561695	788 bp distal
Rr561696	regulatory region 561696	357 bp proximal
Rr561697	regulatory region 561697	1311 bp proximal
Rr561698	regulatory region 561698	1438 bp proximal
Tssr25397	transcription start site region 25397	358 bp upstream
Tssr25398	transcription start site region 25398	317 bp upstream
Tssr25399	transcription start site region 25399	289 bp upstream