rs33652480 SNP Detail

Summary

• ID
  rs33652480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156714699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAAGTGTA AAGTGTCTGC TATGCATACA GTGAAATGAT
  GATTGTCTGC TCCTGAGCAT AGGTGAGCCT TGAAAACATT ATGCCAAGTG GAAGACTCTA
  Y
  GGCTACATGG TCCCCTTAGT AAAATACAGA ATACACAGGG CCAGAGACAG AAAGTAGGTT
  AGTGGTTGCC AGTACCTGAA GCTCCGGAGA GAGGTGGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45304484	mCV25127070	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148084896	ENSMUSSNP43225	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33652480					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156714699 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			1920 bp distal
Rr568378	regulatory region 568378			791 bp proximal
Rr568379	regulatory region 568379			1044 bp proximal
Sla2	Src-like-adaptor 2			mRNA-UTR
Tssr21217	transcription start site region 21217			265 bp downstream