rs33647950 SNP Detail

Summary

• ID
  rs33647950
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149736701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTACGGGC GCCACCTCAG ACAGGCCCAT
  TTGTTGGAGT ATGTACATAT ATGTGAGACG TTAAAAGCAA GGGAAAGGTG TGATTGTGTT
  GCCTCTCATG TTCTATGCAA CAGTCCTGTC TGCCTCTGGA CAGCCCCCAT GCTGACACTT
  M
  AGGACTTAGA AGGTCATCAG TGCTTAGAGA CATAGAGGTG GACTGGATGG ACAATGCTCT
  CCCCTCCTCC CCTCACACTC TCCCAGAAGC TCTCGCTCTC TCACCTTTGG GTCCTTGAGC
  CTCATCATCA CTGTCGGAGC TGTCATTACT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49510999	NES12852285	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C		A		C	C	A		C
ss145700876	ENSMUSSNP1646562	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C					A
ss320043128	CHEV_1_151708080	CHEVERUD	SCREENING_POP	f	SNP											C						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33647950					SNP	C	C	C	C	A	C	C	C	C	C	C	A	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510999	NES12852285	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149736701 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1860 bp proximal