rs33647948 SNP Detail

Summary

• ID
  rs33647948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149736743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACATATAT GTGAGACGTT AAAAGCAAGG
  GAAAGGTGTG ATTGTGTTGC CTCTCATGTT CTATGCAACA GTCCTGTCTG CCTCTGGACA
  GCCCCCATGC TGACACTTCA GGACTTAGAA GGTCATCAGT GCTTAGAGAC ATAGAGGTGG
  R
  CTGGATGGAC AATGCTCTCC CCTCCTCCCC TCACACTCTC CCAGAAGCTC TCGCTCTCTC
  ACCTTTGGGT CCTTGAGCCT CATCATCACT GTCGGAGCTG TCATTACTCA CGATGTGCTT
  TGCTGTAATA TTTTCTATGG GAAGAAGACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49510997	NES12852288	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G		A	A		G		A	G		G
ss145700884	ENSMUSSNP2740930	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G					G
ss320043129	CHEV_1_151708122	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33647948					SNP	A	A	A	A	A	G	A	G	G	A	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510997	NES12852288	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149736743 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1818 bp proximal