rs33647945 SNP Detail

Summary

• ID
  rs33647945
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149736925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAGACAT AGAGGTGGAC
  TGGATGGACA ATGCTCTCCC CTCCTCCCCT CACACTCTCC CAGAAGCTCT CGCTCTCTCA
  CCTTTGGGTC CTTGAGCCTC ATCATCACTG TCGGAGCTGT CATTACTCAC GATGTGCTTT
  GCTGTAATAT TTTCTATGGG AAGAAGACAA AATCATTGAG ACATCTTGGG GATCAGATTC
  M
  CAACTAAATT TACGGGGCAG ACGAGGGAGT ATTGGTGCAA GTCTTTAATT CCAGCTCGCA
  GGAGGTGGGG GCAGGCAGAA CTCTCCGGGT TCAAGGCCAG TTCCAAGCCA ACCAGAGCTA
  TGTGGTGGTC GCATTCCTTT TTAACTGTGG AGAAGTGATC AGAGCAAAAC TACAGGAGGA
  GGACTACTGT GTCTCCCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49510994	NES12852295	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33647945					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510994	NES12852295	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149736925 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1636 bp proximal