rs33646929 SNP Detail

Summary

• ID
  rs33646929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149737225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAAGTGAT CAGAGCAAAA CTACAGGAGG
  AGGACTACTG TGTCTCCCTG GAACTTTAGC CTTAGTGTTG TAAGTGGACA CTTACCAGAT
  TCGCTAATTT AAAAAAAAAT GTATCACTGA GTGAAATAAT ATCCCAGTAA ACAAAATTAA
  Y
  GTAAATTTAT CAATTCCTAG TTTTAAGGAA AGGGCTTTTA TGAGTTCATT GTAACTTTAA
  TAACTGCTTG ATTATATTTT TAAATAGTGT TTATGAAAGA GAATAAAGGA CAAAACCAGA
  TCTACAAATG ATCTACTTAC TAAACAGTCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49510988	NES12852306	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	T		C	C	T	C		C
ss320043139	CHEV_1_151708604	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33646929					SNP	T	T	C	T	C	T	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510988	NES12852306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149737225 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	1336 bp proximal