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rs33646924 SNP Detail
Summary
  • ID
    rs33646924
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149737607 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTAACTTCTG ATTTTTTTTG
    CCAACACTGA AAACCATCTG TCGGTTTCCA GTATGTGAAT AATTTGTCTT TTTTTTTCTT
    TTCAAAGCAT ACTAAGACCA GCCATGAAAG CTAAGAAGCA CTACATAGCC TTAATATCAA
    CATAGTGGTA AAAGCTGGTC TAACATTTCA CCATCCTTTT CCCAGGGGAA ATGCATCTAA
    Y
    TTGTGAAACC TGACAACTAT TCTTGTGATT AATATTTGCA GAAAAATCAG ACTTTCTGCT
    GGTTCATGTG AACTATGCTT CGTAGTGACT TTTTCTTTTT CTTTGCTAGC AAATAGAAAA
    GACTATATTT TTTTATTCAA TTTCAATACA CTAGATCCAA ATTTAGCAAT TTTACTCACA
    AGAACCACTT GGGAAAACGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss49510982 NES12852312 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T C T T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33646924 SNP T T T T T T T T T C T T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49510982 NES12852312 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149737607 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pla2g4a phospholipase A2, group IVA (cytosolic, calcium-dependent) Intron
Rr420110 regulatory region 420110 954 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory