rs33646924 SNP Detail

Summary

• ID
  rs33646924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149737607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACTTCTG ATTTTTTTTG
  CCAACACTGA AAACCATCTG TCGGTTTCCA GTATGTGAAT AATTTGTCTT TTTTTTTCTT
  TTCAAAGCAT ACTAAGACCA GCCATGAAAG CTAAGAAGCA CTACATAGCC TTAATATCAA
  CATAGTGGTA AAAGCTGGTC TAACATTTCA CCATCCTTTT CCCAGGGGAA ATGCATCTAA
  Y
  TTGTGAAACC TGACAACTAT TCTTGTGATT AATATTTGCA GAAAAATCAG ACTTTCTGCT
  GGTTCATGTG AACTATGCTT CGTAGTGACT TTTTCTTTTT CTTTGCTAGC AAATAGAAAA
  GACTATATTT TTTTATTCAA TTTCAATACA CTAGATCCAA ATTTAGCAAT TTTACTCACA
  AGAACCACTT GGGAAAACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49510982	NES12852312	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33646924					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510982	NES12852312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149737607 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	954 bp proximal