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rs33646111 SNP Detail
Summary
  • ID
    rs33646111
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149737877 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      GACTATATT TTTTTATTCA ATTTCAATAC
    ACTAGATCCA AATTTAGCAA TTTTACTCAC AAGAACCACT TGGGAAAACG CAAGCTCAAA
    AAAAAAAAAA AAACCAAGGG GTGTGGCATG CAGCTCCCCA TATTTCTCTC TTTATATTTG
    Y
    TAAGCTCACA TAAATAGCAG ATGCATGGAC AGTTACATAA TGAAAAGGTT AGTAAATTCC
    TGAGAGGTTA AATTTCACTT TTACTGGCAT TAGTTATAAC TACAAAATTC AACAAAATAA
    AATACTCAAA ATGTGATTTT TTTCTTTTCC                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss49510979 NES12852315 PERLEGEN MM_PANEL2 f SNP T T T T C T T T T T C T T C T
ss320043153 CHEV_1_151709256 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs33646111 SNP T T T T C T T T T T T C T T C C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49510979 NES12852315 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149737877 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pla2g4a phospholipase A2, group IVA (cytosolic, calcium-dependent) Intron
Rr420110 regulatory region 420110 684 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory