rs33646111 SNP Detail

Summary

• ID
  rs33646111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149737877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACTATATT TTTTTATTCA ATTTCAATAC
  ACTAGATCCA AATTTAGCAA TTTTACTCAC AAGAACCACT TGGGAAAACG CAAGCTCAAA
  AAAAAAAAAA AAACCAAGGG GTGTGGCATG CAGCTCCCCA TATTTCTCTC TTTATATTTG
  Y
  TAAGCTCACA TAAATAGCAG ATGCATGGAC AGTTACATAA TGAAAAGGTT AGTAAATTCC
  TGAGAGGTTA AATTTCACTT TTACTGGCAT TAGTTATAAC TACAAAATTC AACAAAATAA
  AATACTCAAA ATGTGATTTT TTTCTTTTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49510979	NES12852315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T		C	T	T	C		T
ss320043153	CHEV_1_151709256	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33646111					SNP	T	T	T	T	C	T	T	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510979	NES12852315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149737877 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	684 bp proximal