rs33646108 SNP Detail

Summary

• ID
  rs33646108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149738184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAACAAA ATAAAATACT
  CAAAATGTGA TTTTTTTCTT TTCCTATTAT AACTGTGACA GCAGTAATTC TGTTCCACAG
  CAGAGGCGGG TAGTAAAAAA GACACACCCC AGTTGTCATA CACTTTGGGT TGCTCTGCTG
  CTTGCTATCT GCACTTTTCT TTCCTTAGAC ATTTTCTCCT GTCTGTCTCT ATGGCTTTGG
  Y
  ATGTCCTACT TTGGCTGCAT TTAGTAAGCG AATTTAAGAA AATGGCACTG TTTTCTTTAT
  AAGGATGTTT TTAGAGCTTG ACTGGATTTA TCTGAACTCA TCTCTGGTAT CTTTACATAG
  CTCACTTTAG TAGTAAAATT TCCCACATCA AACAACTCTT TGAGCAAGTA AATTATTTCA
  TTTAAAGTTA TTTAATCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss49510976	NES12852318	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs33646108					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49510976	NES12852318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149738184 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	377 bp proximal