rs33643537 SNP Detail

Summary

• ID
  rs33643537
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148215972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCCTCTG TCTTGTGTGC TCAGCTATCT GCTGACAGAA
  GGCCTTGGAA GGCTCAGCCA GTGTCCCATC CTCTTGATGC TCCAGTGCTG GGAGGAGCAG
  K
  CATACTATCC AACTGAGCCA AGCCAACCTG CAGCATCATG AATAGTAACA AACTATTACT
  GTCTTGAGCC ACGAACATTT TAAATTGGTT TATTATAGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45303082	mCV24014781	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss147923716	ENSMUSSNP6950165	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320555345	CHEV_2_148199788	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33643537					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148215972 () rs orientation: forward

Symbol	Name	Function Class
Rr566885	regulatory region 566885	1513 bp distal
Rr566886	regulatory region 566886	within coordinates
Rr566887	regulatory region 566887	1373 bp proximal
Rr566888	regulatory region 566888	1458 bp proximal
Rr566889	regulatory region 566889	1839 bp proximal