rs33642938 SNP Detail

Summary

• ID
  rs33642938
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129024735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTGTAGGT CAAATGATGG GCCTTCAGGA GACATAACCT
  GTGAGTATTC TGATCTGGAA TTTCCCAGCC TCCTCTGGGC AATACATTTC TGTTGCTTAG
  W
  GTCCACGGCG TACTGTCTTA GCAGTCTGCA TAGATTAAGA CACTAATGTG CTCATTGTTT
  GCCAAATATA GGAAGTGAGG ATGGCCCATG TTCCCGTGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45303146	mCV23185336	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss147582193	ENSMUSSNP6798400	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33642938					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129024735 () rs orientation: forward

Symbol	Name	Function Class
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	within coordinates
Rr564860	regulatory region 564860	1090 bp distal
Rr564861	regulatory region 564861	832 bp distal
Rr564862	regulatory region 564862	within coordinates
Rr564863	regulatory region 564863	545 bp proximal
Rr564864	regulatory region 564864	988 bp proximal
Tssr26190	transcription start site region 26190	962 bp downstream