rs33638140 SNP Detail

Summary

• ID
  rs33638140
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:157890467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTACTTA TTTTATGTAT
  ATGAGTATAC CATTGCTTTC TTTAGACACA CCAGAAGAGG GCATTATTTC CCACTACAGA
  TGGCCATGAG CCACCATGTG GTTGCTGGGA ATTGAACTCA GGACCTCTGG AAGAGCAGTC
  TATGCAGTTA ACCGCTGAGC CATCTCTCCA GCCCACTAAT AGCATTCTTG TTTATAAGCA
  R
  ATAACTTACT ATTATCTGAG GACAGTCTTG TAGCCACTGA TAGTAAATTT ACTGCACTCT
  CTTTATTATT ACTTTATTGC AATAGGGAGT TTGCCTTTAA GGATACAGTT GCCTCATATA
  GTCCCTTATG AGACAAGCTT GATTTGGTTC ATCTGTTTAT TGTAAAAAAA AAAAAAAAAA
  GAGCCACAAA ACAAACAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45302641	mCV25108893	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33638140					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157890467 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rprd1b	regulation of nuclear pre-mRNA domain containing 1B			Intron
				Noncoding-Transcript-Variant
Rr568629	regulatory region 568629			336 bp distal
Rr568630	regulatory region 568630			446 bp distal
Rr568631	regulatory region 568631			133 bp distal