rs33636741 SNP Detail

Summary

• ID
  rs33636741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:173957282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGTCTTC AGAAGGCCGT
  GTCACTTGTG CCAAGTCCTT TTATAGATAA GACCCTCGCC GGAGCTCCTC GATTAAGGGA
  AGGAGAATTA CGGGAAGGGC ATGTTCATCA GTGTATCCCT GGAACAGCGG TCAGAGCCAT
  GCCAACCCCC CACACATTAA CCAGAACAAC ACGCCGTGGC AGCGGCCATT TTTGCTGGGG
  Y
  GTTTCTCTGA GGAGGTGGCA GTCCTGGGCA GGATGAGTAG GAGTTTGTCA GACAGGCATT
  TTCTCCTTCC TTGTGGTTGG GCAGGGCACC TTGATGCATG CATAGCGTCT GTGCTCGGGC
  ATCACCTCTT TCTTTGGGAA GATGGAGTAT GTAAGCAAAA AGGGAGGGAA GTGATAGGGC
  AAAGGCCATG GGAGCTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45302156	mCV22768271	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148339628	ENSMUSSNP1255891	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
ss320626998	CHEV_2_173940990	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33636741					SNP	T	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173957282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Npepl1	aminopeptidase-like 1			Intron
				Noncoding-Transcript-Variant
Rr572073	regulatory region 572073			1391 bp proximal
Rr572074	regulatory region 572074			1656 bp proximal
Tssr788	transcription start site region 788			485 bp upstream