rs33636088 SNP Detail

Summary

• ID
  rs33636088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158563058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATTCTGGG CGATGGTTGA TTCATTCATC AAACACTGCT
  GGCATCTACT CTGTGTCCAA CCTGCTGCTG CGTTCATGAG GCCTCACCCT GGCTGCAGGG
  R
  TGCCCAAAGT CACGTGGGGT GCCCAAAGTT ACGTAGGGTG CCCAAAGTCA CGTGACCATG
  TAGCTCCGCT CTTGCCATTA GAAAAGTAGC ATCCTCTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45302042	mCV22655640	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss148119552	ENSMUSSNP674172	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320590146	CHEV_2_158546874	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33636088					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158563058 () rs orientation: forward

Symbol	Name	Function Class
Ppp1r16b	protein phosphatase 1, regulatory subunit 16B	Intron
Rr367352	regulatory region 367352	1954 bp upstream
Rr397449	regulatory region 397449	1948 bp downstream
Rr568827	regulatory region 568827	1109 bp distal
Rr568828	regulatory region 568828	within coordinates
Rr568829	regulatory region 568829	950 bp proximal
Rr568830	regulatory region 568830	1664 bp proximal