rs33633094 SNP Detail

Summary

• ID
  rs33633094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCGTCCAG CCGGGAAGCG TCGCGGCGAC CCAGACGGCC
  CGGGAGAAGT AGCCGCGCGG TAGCGGCGGG CGGGTAGACT TAACTCTTCG CTGACGCGGG
  Y
  TCATTGCGGA GGTTTGAGTA TTAAAATCAC ACGCGCCCAG ACTTTGCTTG TACCCATTCA
  AGTCAGTTTG GCCATAGTGG TCAATTTCCT TTCCGGATG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45302097	mCV22674649	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss147552387	ENSMUSSNP2630764	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33633094					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968603 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			Intron
				Noncoding-Transcript-Variant
Cpgi12235	CpG island 12235			within coordinates
Gm74510	predicted gene, 74510			within coordinates
Gm75592	predicted gene, 75592			520 bp upstream
Gm75596	predicted gene, 75596			1202 bp downstream
Rr397296	regulatory region 397296			650 bp upstream
Rr564651	regulatory region 564651			623 bp distal
Rr564652	regulatory region 564652			456 bp distal
Rr564653	regulatory region 564653			within coordinates
Rr564654	regulatory region 564654			1330 bp proximal
Rr564655	regulatory region 564655			1339 bp proximal
Tssr20042	transcription start site region 20042			627 bp downstream
Tssr20043	transcription start site region 20043			875 bp upstream
Tssr20044	transcription start site region 20044			904 bp upstream
Tssr20045	transcription start site region 20045			1428 bp upstream
Tssr20046	transcription start site region 20046			1442 bp upstream
Tssr26150	transcription start site region 26150			717 bp downstream
Tssr26151	transcription start site region 26151			1341 bp downstream