rs33632782 SNP Detail

Summary

• ID
  rs33632782
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95289404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATGCTGCT ACCCGACTCC CCCTACGCCG GGCGCCTGCA
  ACGCGCTCGG GCCGGCCTCT GCGCGGCTCC TGCCAGCCCG CTCGGGGTTG GTGCGCGCCG
  M
  CGTCTGTCGC CCCGGCTCCT CCCCTTCGCC GTGCTCCCCT CCTCCTCTGC CTGTCCCACA
  CCCGCCCTCC TCGCAGCTCC AGACTCCCGC CGCCACCTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46299894	mCV23074463	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss136828238	ENSMUSSNP1309165	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33632782					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95289404 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	81 bp upstream
Gm35915	predicted gene, 35915	110 bp upstream
Gm37805	predicted gene, 37805	53 bp upstream
Rr684785	regulatory region 684785	1767 bp distal
Rr684786	regulatory region 684786	1563 bp distal
Rr684787	regulatory region 684787	1389 bp distal
Rr684788	regulatory region 684788	1366 bp distal
Rr684789	regulatory region 684789	1207 bp distal
Rr684790	regulatory region 684790	within coordinates
Rr684791	regulatory region 684791	15 bp proximal
Tssr86547	transcription start site region 86547	74 bp upstream
Tssr90904	transcription start site region 90904	232 bp upstream
Tssr90905	transcription start site region 90905	160 bp upstream
Tssr90906	transcription start site region 90906	139 bp upstream
Tssr90907	transcription start site region 90907	112 bp upstream
Tssr90908	transcription start site region 90908	75 bp upstream
Tssr90909	transcription start site region 90909	52 bp upstream
Tssr90910	transcription start site region 90910	18 bp upstream
Tssr90911	transcription start site region 90911	within coordinates
Tssr90912	transcription start site region 90912	416 bp downstream