rs33628588 SNP Detail

Summary

• ID
  rs33628588
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164494309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACATAT GTAACATGTT
  AAGGCTCAGT AATGTGTGTG TAGGGGGCTA CAAAAGCAGA AGTAGTTTTT GGTTTTTGAT
  TTTTTAAAAA ATATACCACT ACACAGTGTT TCAGTCACTT CTGCGTGTGT TCCCTGGGGA
  TGCCACTGTG TTAGCTAAAT CGACAGGTCC TTACACTCTG CCCCACCTTC TGTTTGTTTC
  R
  GTTTTTTGTT TTCTAAAGAT GCCATTGTGC ACTGTTAAGT TTCCACACTC TAACGCTTTG
  CGCTACCATT TCTTTCTTGT TCAGTTAGCA TCTTGGTATC GTGCTAATGA GCATGCGCCG
  CTCTGGGTAA TGTGTAGAAG GTAGACCTGG TTGAGCTCCT GTCCTCACCA TTGGACAGAA
  ACAGTGATCT ATTATCACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss45301807	mCV23183369	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss148229902	ENSMUSSNP2231398	ENSEMBL	ENSEMBL_Sanger	f	SNP			G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs33628588					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164494309 () rs orientation: forward

Symbol	Name	Function Class
Rr569671	regulatory region 569671	571 bp proximal
Tssr21622	transcription start site region 21622	1437 bp upstream
Tssr21623	transcription start site region 21623	1451 bp upstream
Tssr21624	transcription start site region 21624	1506 bp upstream
Tssr21625	transcription start site region 21625	1588 bp upstream
Wfdc9	WAP four-disulfide core domain 9	Intron