rs33628253 SNP Detail

Summary

• ID
  rs33628253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84218741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTAATCACC AGCTGAAAAC AGTCCCTGGG AACTGTTGTC
  TGGACAGCAA GTGGTGGTCT CTCCCCGGAG CAGAACGGTA TGTCCTGGCT CACTCTGTGA
  Y
  TGGTCACAGT TACAAGACTT GCAATGTCAA GTCGAATTAT GTATAAATAT ATATATATGG
  TTTTTGTTTT TTTTTTTTTT TTGGTTTTTT TTTTTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45301456	mCV24735354	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss146830353	ENSMUSSNP4734981	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320371280	CHEV_2_84228554	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33628253					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84218741 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			821 bp distal
Rr560246	regulatory region 560246			485 bp distal
Rr560247	regulatory region 560247			5 bp distal
Tssr24971	transcription start site region 24971			1205 bp upstream
Tssr24972	transcription start site region 24972			1301 bp downstream
Tssr24973	transcription start site region 24973			1358 bp downstream
Tssr24974	transcription start site region 24974			1399 bp downstream