rs33625903 SNP Detail

Summary

• ID
  rs33625903
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:168509838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA GGGAATTGAG AAGGCCAGGC
  M
  CAGAGCGAAC GTGGACAGTC AGGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45301431	mCV27562739	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss148272183	ENSMUSSNP5263705	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320610179	CHEV_2_168493418	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33625903					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168509838 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp9a	ATPase, class II, type 9A			Intron
				Noncoding-Transcript-Variant
Rr374244	regulatory region 374244			1035 bp upstream
Rr571055	regulatory region 571055			1475 bp proximal
Rr571056	regulatory region 571056			1969 bp proximal