rs33623229 SNP Detail

Summary

• ID
  rs33623229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:131096583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTACAAG GCTTCCTAGG GCACTGTCCT GAGTTTATGG
  AAGCAATAAA CAATGGCTGT CTGAGCAGCC AAGAGGAGAT TTTTGGATCT GTTGAGTTTC
  Y
  GCCAAGTGTG TCCTCCAGGG AAGTAGCTTT TGCAAGGCAC CAGTCATTAG TGTTGAGGTA
  GGCTTTTAAA TGATGCTGCT TCATTTTGGT CATCTCTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45301062	mCV25352536	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147601940	ENSMUSSNP5533542	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33623229					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:131096583 () rs orientation: forward

Symbol	Name	Function Class
Gm75131	predicted gene, 75131	within coordinates
Rr397320	regulatory region 397320	415 bp downstream
Rr565224	regulatory region 565224	within coordinates
Rr565225	regulatory region 565225	476 bp distal
Rr565226	regulatory region 565226	1121 bp proximal
Rr565227	regulatory region 565227	1228 bp proximal