rs33622109 SNP Detail

Summary

• ID
  rs33622109
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21459645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGTGCA CAAATTCCAG
  AGCCACTGGC TTGCTTCATA GATTAAAATG TACCATACCT CACACCTTTC TAAACTTAAG
  AGCTTGTACT AAGAGAGAAA CCTGATTATA GGCAAAGCTG CCATTAACAC CTATAAAAAG
  TAAGGTCATG GTCTATGTAG CTAGTGGCTC CTGGCAGTGT TCTCTCTCAA GGCATGACTA
  W
  GATTGCCACT GAATTTGTTG ATGTCAAAAG TACTAAAGGG CTCCACTCCT CCAAGGGTGT
  ATGGGCTGGG TGAGGGATAG AGACAGATGC CCTGTGGGTA AGGAAAGCCA ATACCTCACA
  ATACTGGAAT TATCTACAGT GTATCTGCCT GACCCAGAAT TAGAGTCCCC AACAGTAGCA
  ACCATCTCTA CTGATCACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46836941	NES10855011	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33622109					SNP	A	A	A	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46836941	NES10855011	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21459645 () rs orientation: forward

Symbol	Name	Function Class
Rr574117	regulatory region 574117	1537 bp distal
Rr574118	regulatory region 574118	1597 bp proximal