rs33620576 SNP Detail

Summary

• ID
  rs33620576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21327060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATAGTGG AGGTTACTGA
  GCACTTGGCT AGAGGCACTA GGTTAGATCT TCACCACCAC AATAATAAAA TATTCCAGCC
  TTCCACTTAC TAAGTGCAAC ACTGGGAAAG CCCCTTTAAA GTTGGTATTA CAGTGGTCTA
  AGGTAATCAC ACACAACAGT GATCAGTACT TGGCACAAGG TAAAGCAGGA TAGAAAACTA
  Y
  ATAAGAACCC ACCAATCTAG CATGGGCCTT ACAGACATCA CTTTGAATCA TTCTAAGGTC
  ATACAAGGAC AAAACCACAC TCCTTTTAGC TACCCTTCCT TCTGCACTCC TCTCTTTTTC
  CTCTTTCTTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTT TCTTTCTTTC
  TTTCATCATT CCGAGACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46835675	NES10860789	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33620576					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46835675	NES10860789	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21327060 () rs orientation: forward

Symbol	Name	Function Class
Rr374645	regulatory region 374645	within coordinates
Rr574111	regulatory region 574111	274 bp distal