rs33620202 SNP Detail

Summary

• ID
  rs33620202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105298888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGTCCT CAGGTAATAC
  TATGTCCAAT TTTCTGAGGA ACCACAAGAC TAATTTCCAG AGTGGTTGTA CCAGCTTGCA
  ATCCCACCAG CAATGGAAGA GTGTTCCTCT TTCTCCACAT CCTCGCAAGC ATCTGCTGTC
  ACCTGAGTTT TTTATCTCAG CCATTCTGAC TAGTATGAGG TGAAATACAG CAAATCTTAT
  Y
  CAGATATTTC ATGTTACATT CCCATGGAAT TTATCTCCAG ATCTAGTTGT TCATCAATGA
  TCTGAAAGAA AGATGTCTGC ATGTGAAGGA GGCATCTAAG TAGACATGAC AAGGTATAAA
  ACTGCCCAGA ATTCTGTAGA TAGATGGTGA AAGTGGAGGC CATGACAATA GAAGGCCACT
  AGAGAAGTCA GGGGAGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46835964	NES10710974	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33620202					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46835964	NES10710974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105298888 () rs orientation: forward

Symbol	Name	Function Class
Rr582698	regulatory region 582698	1157 bp proximal