rs33619708 SNP Detail

Summary

• ID
  rs33619708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21325144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAAACAA TAATTCTTTC TAGGAAGCTT CAAGAAGTTT
  TTTGAATAAT CAAGGGACTC TACACAATAC ACATATGGTG GTGTCCGTGT AATTCCATCC
  Y
  GCTTCTGCCC ACTCTCAAAC AGCTGCAGTT CCCCTGTGTC TTGAATGAAG AGAATTGGCA
  CTTGAGAGGA GTGCAATTGG AAAAGAAACA AAATATGCTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46835666	NES10860886	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33619708					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46835666	NES10860886	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21325144 () rs orientation: forward

Symbol	Name	Function Class
Gm29137	predicted gene 29137	1890 bp upstream
Rr374645	regulatory region 374645	181 bp upstream
Rr574109	regulatory region 574109	1901 bp distal
Rr574110	regulatory region 574110	1648 bp distal
Rr574111	regulatory region 574111	1308 bp proximal