rs33618919 SNP Detail

Summary

• ID
  rs33618919
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21324824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACGTTT ATAGTATATG
  ATTTGGGTCA CTTATGGTGT TACATTCACA AATAAAATAA GTCTTGAAGG GCATAGAGCC
  TACCTGAATG CCAACTGAAT TAATTCAGTG GCTGCTCTAT CACAGTAACA GAATGCCCAT
  AGCAAATGTG GGCTTTCCAC GCACTGTTTT CAGGTCTGTA GAAGAGGATT TGAGAGAAAA
  K
  CATAGGGGTA CACTAAAGAA ACTTTCCAGA GAGAATCACA ATAGTTCTGA GGGTCCCGTG
  GATGAATAAA ATCATTTCTC ATGTGTGTTG GTGTGTAATT AACACAAATT TTGCCCTGAT
  TTTTGACCCC AAAGTCTCAG AAGTTTGTGA GAATATAGAG AATATTTACA GAAAAGCATT
  TTTCCTGAAT AATTTTATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46835657	NES10860883	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33618919					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46835657	NES10860883	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21324824 () rs orientation: forward

Symbol	Name	Function Class
Gm29137	predicted gene 29137	1570 bp upstream
Rr374645	regulatory region 374645	501 bp upstream
Rr574109	regulatory region 574109	1581 bp distal
Rr574110	regulatory region 574110	1328 bp distal
Rr574111	regulatory region 574111	1628 bp proximal