rs33604949 SNP Detail

Summary

• ID
  rs33604949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127968666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGCGGGCGG GTAGACTTAA CTCTTCGCTG ACGCGGGTTC
  ATTGCGGAGG TTTGAGTATT AAAATCACAC GCGCCCAGAC TTTGCTTGTA CCCATTCAAG
  Y
  CAGTTTGGCC ATAGTGGTCA ATTTCCTTTC CGGATGTCCC TGGCGGCCCG GTTCCTTTTG
  CGACCGTCCT GTGGATATTG AGGAACACCG TATCTACAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45298457	mCV22674648	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss147552391	ENSMUSSNP4226345	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33604949					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127968666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l11	BCL2 like 11			Intron
				Noncoding-Transcript-Variant
Cpgi12235	CpG island 12235			within coordinates
Gm74510	predicted gene, 74510			within coordinates
Gm75592	predicted gene, 75592			583 bp upstream
Gm75596	predicted gene, 75596			1139 bp downstream
Rr397296	regulatory region 397296			587 bp upstream
Rr564651	regulatory region 564651			686 bp distal
Rr564652	regulatory region 564652			519 bp distal
Rr564653	regulatory region 564653			within coordinates
Rr564654	regulatory region 564654			1267 bp proximal
Rr564655	regulatory region 564655			1276 bp proximal
Tssr20042	transcription start site region 20042			690 bp downstream
Tssr20043	transcription start site region 20043			812 bp upstream
Tssr20044	transcription start site region 20044			841 bp upstream
Tssr20045	transcription start site region 20045			1365 bp upstream
Tssr20046	transcription start site region 20046			1379 bp upstream
Tssr20047	transcription start site region 20047			1971 bp upstream
Tssr26150	transcription start site region 26150			654 bp downstream
Tssr26151	transcription start site region 26151			1278 bp downstream