rs33599664 SNP Detail

Summary

• ID
  rs33599664
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:92160147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGAAGATCCT GGAAAAGTGT CCTGGAGAAG AGCGAGCCTG TGGATCGTCA CCATTGTGCA
  GAGATGTGGG TTGAGTCCTA GCAGCAAGGG GGTCTATGGA AGTGTTTACA GGCAAATACT
  TAACTGGATG TCTTAGAGAT TCCCTCTTTT TGCTGGTAGA CAACAGGTTG GAAATGGACA
  GGAAGCACAG GCTGGACATT AAAATGTCAT GAGCTGATCT TCAGAGACTC TGCCTCTAGT
  CCTAGGCACT TTATATGGAC TGCCTGGTTT CTTTGGGTTT TTTTTTTTTT GGGGGGGGGT
  K
  GTTGTTGTTG TTGTTGTTTT TTGTCTGTCT GGTTTTTTGT TTGTTTGTTT TTGAGACAGG
  GTTTCTCTGT GTAGCCCTGG CTGTCCTGGA ACTCACTCTG TAGACCAGGC TGGCCTTGAA
  CTCAGAAATC CATCTGCCTC TGCCTCTGCC TCTGCCTCTG CCTCCCAAGT GTTGGGACTA
  AAGGCGTGTG CCACCACTGC CCAGCTGACT GCCTATTTTC TTTCTCACAA CAGCTGTATG
  AAAGGCTTTC AGGAAAGAAT CAAAGGTTTA GTTCATGTTT TTCAAACTAA AATTAATTAA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45298299	mCV23291799	ABI	CRAMUS_MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33599664					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92160147 () rs orientation: forward

Symbol	Name	Function Class
Phf21a	PHD finger protein 21A	within coordinates
Rr560893	regulatory region 560893	965 bp proximal
Rr560894	regulatory region 560894	1226 bp proximal
Rr560895	regulatory region 560895	1686 bp proximal
Rr560896	regulatory region 560896	1817 bp proximal