rs33596346 SNP Detail

Summary

• ID
  rs33596346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71851214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG GCTGTGTCCA TATGTATGAC
  R
  CTCTTAGGAG CCAACCCTAG CTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46295601	mCV24425502	ABI	CRAMUS_MOUSE	f	SNP	G	G	A			A	G
ss60631379	NES16279464	PERLEGEN	MM_PANEL2	f	SNP			A	A	G			G		A	A		G
ss145146208	ENSMUSSNP6996107	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				G
ss322703842	CHEV_8_73922469	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs33596346					SNP	G	G	A	A	G	A	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60631379	NES16279464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71851214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2310041K03Rik	RIKEN cDNA 2310041K03 gene			1795 bp upstream
Babam1	BRISC and BRCA1 A complex member 1			Intron
				Noncoding-Transcript-Variant
Cpgi20525	CpG island 20525			1421 bp distal
Rr400925	regulatory region 400925			1642 bp downstream
Rr665045	regulatory region 665045			1699 bp distal
Tssr77853	transcription start site region 77853			1679 bp downstream