rs33596106 SNP Detail

Summary

• ID
  rs33596106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104628511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTCACTG TCTGCCAGTC
  AAGACCACAG CTTCCAAGCA TGACTTACAG ACTATTAGTT ATTTCTCTAC CAGCAAGCTG
  TCTGAGCTGG GCCTTCTTCC CTGCACTGAG AGAAGTTCCT GGCAGAGTCA CACTTTGCTT
  AGTGAATTGA ATATTATTCT CAGTCTCTAT GGTCTTGACC CCCTTTGCGT GGCTCCAAAC
  R
  CTTTCAATGC TTACAGTCAG GGAAGGGCCG GGAAAGATGT CCTATTGTAT TCCAATCCGT
  GTTTCCCTGA CAAGTCTGCA CGAGTCGTTC AAGGTGGTCA GTATATCGGG AGCAGGGCTC
  AGGAGTCCGT GACTCCAAGC CGGGACTCTG GCCACTCAAC TTATCATTTA TCCCTGCCTG
  GCATAGCTGC ACCTGTAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46832593	NES10721901	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33596106					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46832593	NES10721901	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104628511 () rs orientation: forward

Symbol	Name	Function Class
Rr582589	regulatory region 582589	964 bp distal