rs33594346 SNP Detail

Summary

• ID
  rs33594346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104627661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAGTGA GGGACAGTCT
  CCCGGGAGTC AGTCTTCTCG TCTCCCTGTA TTAGTAGAAC CAAACAGGCT GCCAACTAGT
  GACACAGAAA TGTGTCTGTA CAAGTTCCCA CCCCATCATC GCCGTCCTGG TGGAGAAGGA
  TGGGAAACAT TAGTTGAACA AAAAACCCAT GTACTGAGGT ATCTGAATAG TGTCTAGAGC
  Y
  AGCCTGAGTT CTGGGGCTTT CTCCCATACT CCTCCTGGGC TTTGGATTGC TAAGGGGCTG
  CATACGGCCA ACCTCATGGG ATGCAGGCAG GCAATGCAGA GAACTTCGCA GGTGGGGAAG
  CAGAGCAAGT CATCAGGTCC CAGATTGAAA TGGAGCTGGT GCAAAATGCC AGGGAAAGAT
  GCTTCCAGGG CAGGCACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46832572	NES10721887	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33594346					SNP	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46832572	NES10721887	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104627661 () rs orientation: forward

Symbol	Name	Function Class
Rr582589	regulatory region 582589	114 bp distal