rs33594128 SNP Detail

Summary

• ID
  rs33594128
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104623266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGAAGG CTAAAGAAAA
  AAAATTGTTC TCATCTGGAA CTTAGCTTTT TTTTTTTTTT TTCCAGTTGG GTCCAGAAGC
  CAGGAGGGAG CAGAGAGGAG GACAGGATGG TGGACTTGTC CAGGCTGCAA CCAACAAACA
  TGTACCAAAA AGATGCAGAG AATCAGGATT TCCAGCCCGG CCTGAACTCT ACTGAGCCAC
  R
  TACCACAGAG CATATCCTCC TGTGGACCTT GGAGACTCCC GAAACCGTAT CTCCATCCTG
  ACTCTTTAAT AGTCCCCACC CTACCCCATA TTTCTCAGGA ATCTACAGTA ACCAGCAGTT
  TCTGGGTGAT CCACAAAAAA AGCCTCTCCA GGTCTTTGAG GGAACCATAA CTCTTCCCTG
  GGCTGAGAGG TGAGGGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46832515	NES10722186	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33594128					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46832515	NES10722186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104623266 () rs orientation: forward

Symbol	Name	Function Class
Gm64989	predicted gene, 64989	within coordinates
Rr397915	regulatory region 397915	1432 bp downstream
Rr582584	regulatory region 582584	1573 bp distal
Rr582585	regulatory region 582585	1589 bp distal
Rr582586	regulatory region 582586	586 bp distal
Rr582587	regulatory region 582587	1278 bp distal
Rr582588	regulatory region 582588	764 bp distal