rs33593235 SNP Detail

Summary

• ID
  rs33593235
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102389336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGGGCA CTCTGGGGTG
  TGAATCTGAT TAATGAATAC TCACACTGAT CTGATAGTTC TGAGGACTGA GAAGCCTTGT
  GACTTGCCTT CTCAACTAGA TGCAGCTCCT CTTTAGGAAC AACAGGAAAA AATCAAGCAA
  CTTTTGAATT TTGGGGAGTC CAAACTGGGT CCAAGGTCTA CACTGGCCAC CACTACAAGA
  K
  CCAACCCTCT TCTTTTCGTC CCCGGTCTCA AGTCATTTCC TCATCATTTC TGGACGAGTT
  GACACACAAT GACAGATTTG TACAGCCCAG AAGTAGTGTG GCTGTTTGCA CTTGGGACAT
  ATTCCATGGA GAGAGCACGT GCATCTCGGT GGTTCACTGA GCCTTTGTTT ATTATTTCCG
  CGACCTTCTT TTTTCCCTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45297228	mCV23730997	ABI	CRAMUS_MOUSE	f	SNP		G	T
ss147115674	ENSMUSSNP1921910	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		T
ss320438856	CHEV_2_102399148	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33593235					SNP	T	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102389336 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr561705	regulatory region 561705	within coordinates