rs33593117 SNP Detail

Summary

• ID
  rs33593117
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71698209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGACCAG CAGGGAGGGG
  CAGGGGAATA GTGACCTTTC TCTCCTTTTG TACTCTCAGA GGATAAAGTC AGAGGGCATT
  GGAGACCGGG TCAAACTTGT TTTCCACTGC TTCCCCCAAG CTTTTCTGCT AAACCCGTCT
  TCATGGATCA TAAATTCTTG GTAAATTTAG AGTCTGGCTC AAGTCTGCTA AATTAAGGAG
  S
  AGGAGGGATT ATAAGTATGG CACATTGTGG CACATGCCTT TAACCCCAGC ATTCAGAAGA
  CAAACACAGG TGAATCTATC GAGTTTGAAG TCAGCCGGAG ATCATACACA GTGAGATCCT
  GTCTATAAAT AAATAAATAG AATTTTAAAA AAGGATTATA TAAAACATCC CACATAGATG
  AGTAACACAG CTCTTTTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45296676	mCV25090488	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33593117					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71698209 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	313 bp upstream
Gm75575	predicted gene, 75575	615 bp upstream
Rr370575	regulatory region 370575	within coordinates
Rr558852	regulatory region 558852	1627 bp distal
Rr558853	regulatory region 558853	324 bp distal
Rr558854	regulatory region 558854	within coordinates
Tssr18292	transcription start site region 18292	1733 bp downstream
Tssr18293	transcription start site region 18293	106 bp downstream
Tssr18294	transcription start site region 18294	642 bp upstream
Tssr18295	transcription start site region 18295	649 bp upstream
Tssr24499	transcription start site region 24499	281 bp upstream
Tssr24500	transcription start site region 24500	441 bp downstream