rs33591403 SNP Detail

Summary

• ID
  rs33591403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104621840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCTATT GCTCCAGTCA
  CCGGTAGATG GCACTGTTCT CCCACAACAG ATGCCTGCTC CCGCCTAGCT GGCCAGGCTC
  ACCAAAGCTG TCAGCCCTAT GATTCCTTGG AGACAGAGAC ACCCCGTTCC ATGATGCCAG
  CTGTGGACTG TCACTGAGGC TGCGCTCATG GTGCATTTGA AGACCCTCAC CAAGAAGATG
  Y
  CACTAAGAAG AAGCTAAGCA CTGGCAAGAA GCTAGGTCTT GGGGGTCCAG TCCCTGCACA
  CACCTGTGTG GTTTGTCTTT CTGACAAGGA AGAGCTGCTT TTGGACTCTA AAAGCCCAAT
  TTCTGCTGCC CCAAGAGATG GCAGTGCCAT TTCTAACCCC AGGTGAGCCC GTGCAGTCCA
  GCAGGGTGTC TGGCAGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46832488	NES10722292	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33591403					SNP	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46832488	NES10722292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104621840 () rs orientation: forward

Symbol	Name	Function Class
Gm64989	predicted gene, 64989	within coordinates
Rr397915	regulatory region 397915	6 bp downstream
Rr582582	regulatory region 582582	1413 bp distal
Rr582583	regulatory region 582583	1814 bp distal
Rr582584	regulatory region 582584	147 bp distal
Rr582585	regulatory region 582585	163 bp distal
Rr582586	regulatory region 582586	within coordinates
Rr582587	regulatory region 582587	127 bp proximal
Rr582588	regulatory region 582588	641 bp proximal