rs33590413 SNP Detail

Summary

• ID
  rs33590413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104620839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTAGTGA CTAGTAGTTT
  GATGTTCTTG CCTTGACTTC TCCACAACGA TGTACACACT GATGATATAA ACTCTAACCT
  GGAATTGACT TTCTCCCCTA AGTTGCTTTT TATTAGAGTG TTGGCTACAG CAGCAGAAAT
  AACTCTAGGT CATGGCCCCG TCCTCTTCCA ACATAACCTT AGGAACCAAC TGTTCTGACC
  Y
  TTGGAGGTTC TTCTACTGCT CAGCTTCTCT GTCGGCAGAG ACAGCAAAGG CTTCCCTCAG
  GACAGACCAG GTCCAGAGTA AGGTGAGGGT AGTCTCTGGC TTCCAGATGC CTTCATTGTC
  CTTGGACACG TTAAAATGTC CCCATTGAGG CACAGGGAGA AAGGCCAAAT AAAGTGCTTG
  CCTTGCATCA GGACCTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46832473	NES10722342	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33590413					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46832473	NES10722342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104620839 () rs orientation: forward

Symbol	Name	Function Class
Gm64989	predicted gene, 64989	within coordinates
Rr397915	regulatory region 397915	694 bp upstream
Rr582582	regulatory region 582582	412 bp distal
Rr582583	regulatory region 582583	813 bp distal
Rr582584	regulatory region 582584	505 bp proximal
Rr582585	regulatory region 582585	817 bp proximal
Rr582586	regulatory region 582586	855 bp proximal
Rr582587	regulatory region 582587	1128 bp proximal
Rr582588	regulatory region 582588	1642 bp proximal