rs33590019 SNP Detail

Summary

• ID
  rs33590019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104569063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGAAAA ATGGGAATGG
  TGGATGCCTT CATCTCCAGA GGCAGGCCAT TCTGAGTTCG AGGCCAGTCA GGGCTACACA
  GAAACCCTGT CAAGAAAGGA CAGAAGAAAA ATATATGTAA ATCTGAATGT CCTAGAATAT
  TCTGCAGTGC AACAGCAAAT CAGTAGTTAT GGGCCTAGAA ACAGTGAATA AAGGGCAGCT
  R
  GTAAGGGCAG AGCTCACTGG TTAGACGAAG GTTTCTAATC CACCAGTCTC AAAGTGCGGA
  GCCTGCATCC TGCCTGAGCA TCTTCCTTGT CAGAAGAGGC CAGAGCAGGG GCTGAGAGTA
  GGGTCAGACA GAGGTTCTGG AAGTAAACAG AAAGAGAGGA AGGCAAATCC TGGTGAGCCC
  AAGGCCAGTC TCAAGCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831914	NES10725072	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33590019					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831914	NES10725072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104569063 () rs orientation: forward

Symbol	Name	Function Class
Gm29561	predicted gene 29561	within coordinates
Rr582564	regulatory region 582564	632 bp distal
Rr582565	regulatory region 582565	108 bp proximal
Rr582566	regulatory region 582566	886 bp proximal