rs33590017 SNP Detail

Summary

• ID
  rs33590017
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104568999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCTGG GGTCCTTGTT
  CATGTGCATT CCCCATACAC AAAGCACACT CATTAAAAAA CAAAAAACAG AAAAATGGGA
  ATGGTGGATG CCTTCATCTC CAGAGGCAGG CCATTCTGAG TTCGAGGCCA GTCAGGGCTA
  CACAGAAACC CTGTCAAGAA AGGACAGAAG AAAAATATAT GTAAATCTGA ATGTCCTAGA
  W
  TATTCTGCAG TGCAACAGCA AATCAGTAGT TATGGGCCTA GAAACAGTGA ATAAAGGGCA
  GCTGGTAAGG GCAGAGCTCA CTGGTTAGAC GAAGGTTTCT AATCCACCAG TCTCAAAGTG
  CGGAGCCTGC ATCCTGCCTG AGCATCTTCC TTGTCAGAAG AGGCCAGAGC AGGGGCTGAG
  AGTAGGGTCA GACAGAGGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46831911	NES10725071	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33590017					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831911	NES10725071	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104568999 () rs orientation: forward

Symbol	Name	Function Class
Gm29561	predicted gene 29561	within coordinates
Rr582564	regulatory region 582564	568 bp distal
Rr582565	regulatory region 582565	172 bp proximal
Rr582566	regulatory region 582566	950 bp proximal