rs33590015 SNP Detail

Summary

• ID
  rs33590015
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104568975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGTGTT CCTGGGGATG
  AGGCTGTCTT CTGGGGTCCT TGTTCATGTG CATTCCCCAT ACACAAAGCA CACTCATTAA
  AAAACAAAAA ACAGAAAAAT GGGAATGGTG GATGCCTTCA TCTCCAGAGG CAGGCCATTC
  TGAGTTCGAG GCCAGTCAGG GCTACACAGA AACCCTGTCA AGAAAGGACA GAAGAAAAAT
  R
  TATGTAAATC TGAATGTCCT AGAATATTCT GCAGTGCAAC AGCAAATCAG TAGTTATGGG
  CCTAGAAACA GTGAATAAAG GGCAGCTGGT AAGGGCAGAG CTCACTGGTT AGACGAAGGT
  TTCTAATCCA CCAGTCTCAA AGTGCGGAGC CTGCATCCTG CCTGAGCATC TTCCTTGTCA
  GAAGAGGCCA GAGCAGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831908	NES10725070	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33590015					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831908	NES10725070	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104568975 () rs orientation: forward

Symbol	Name	Function Class
Gm29561	predicted gene 29561	within coordinates
Rr582564	regulatory region 582564	544 bp distal
Rr582565	regulatory region 582565	196 bp proximal
Rr582566	regulatory region 582566	974 bp proximal