rs33588960 SNP Detail

Summary

• ID
  rs33588960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104568185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGTGAA TGATTAACCC
  CAGAAGCCAA GGCGCAGGAG TCCACCCAAC CCTCTCGGGG CTAGTGTGGG GCATTGCTAT
  CCTGAGAAGC TCTAATGGCA CAAAAGGGGA GGGCTGAGAA TAGCTCAGTC AGTGCCATAG
  TGGCATGCCT TGCATGCAGT AGGCAACAGG CCCAGTCCCT AGGACAAACA AAATGACATG
  Y
  CTTCATAGGT ATCCTACAGT CTACTCCTAC CTCTGATGTA TCCCAGACCC TCAAACTCTC
  TGTGTCAGGG AGGTTAACCT TGGCCCTTCA GATCCTCCTG TCTCTAATCC CTACTGGGAT
  TCTAGGCATT TGCCATGTCT GCTTTGTGTA GTGCTGAGGA TGGAACCCCA AGCCTGATAG
  CTGTTGGGTA AGCACTCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46831902	NES10725216	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33588960					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831902	NES10725216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104568185 () rs orientation: forward

Symbol	Name	Function Class
Gm29561	predicted gene 29561	474 bp downstream
Rr582564	regulatory region 582564	within coordinates
Rr582565	regulatory region 582565	986 bp proximal
Rr582566	regulatory region 582566	1764 bp proximal