rs33588297 SNP Detail

Summary

• ID
  rs33588297
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104548417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG GAAACACTAG ATATGCCTGC
  M
  TCTCTGAGGA AATACTACTT AATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46831704	NES10726440	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33588297					SNP	C	A	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46831704	NES10726440	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104548417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	1509 bp distal
Gm43581	predicted gene 43581	1893 bp upstream
Rr582559	regulatory region 582559	1069 bp distal
Rr582560	regulatory region 582560	1866 bp distal
Rr582561	regulatory region 582561	within coordinates
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	Intron